Newsletter – July 2020

Welcome to the July newsletter from The Society of Research Software Engineering! Our monthly newsletter will announce new Society initiatives, gather RSE news, events, blogs, papers and anything else interesting and relevant together in one place. If you would like to add an item or suggest a new section to the next newsletter, submit it via this short form or get in touch with Claire Wyatt, RSE Community Manager.

Society Update

The trustees met online for our monthly meeting on the 14th July. We discussed the organisation of the upcoming trustee election (more of that below), our Annual General Meeting in September (date tbc) and we continue to focus on cementing the infrastructure of the charity in place. We are completing various financial tasks including policies on expenditure, membership and finalising our annual report for the Charity Commission. We will circulate the report to the RSE Community once it’s been submitted. Following the BCS statement about research software standards in relation to Covid-19 modelling, a few trustees, the SSI Directors and representatives from the RSE Community recently met with a BCS representative to raise awareness of our community, the role and to discuss how BCS might work with the Society and other organisations who share related goals to make progress on these issues. Discussions have got underway and we’ll let you know what ideas emerge. If you have any suggestions of other organisations to approach, please fill out the survey below ‘RSE Membership Links’.

  • RSE Membership Links – Mike Spencer helped us to kick off this new initiative. We’re looking for organisations to approach to raise awareness of RSEs. Please complete this survey to help us target effort. This survey is being run by the Society of RSE trustees and was developed by Mike Spencer.
  • Keep up to date – You can keep up to date with trustee meetings as we have shared a summary of Society monthly trustee meetings including the decision log.
  • RSE Vacancies – You can post an RSE role or a role supporting RSEs to the vacancy page on the Society website via a form.

Get involved! Trustee Elections

Each year, several trustees step down after two years of service and new trustees are appointed to the charity board. The second election of trustees of the Society of Research Software Engineering will be taking place this Autumn. Nominations are open from now (see below) until midnight at the end of Monday 31st August, with members voting in September over a period of three weeks. Results will be announced in early October as the new trustees take up their positions. More info here on what it takes to be a trustee and how to nominate yourself.

Membership to the Society

We currently have 312 members with several thousand people forming the online community on the RSE Slack space.  Sign up for membership! with direct debit being the current payment method.

Currently the members benefits are:

  • Support the work of the Society to further research software engineering
  • Eligible to apply for any future opportunities for Society funding
  • Opportunity for early registration to the Society annual conference
  • Opportunity for early registration to any future Society’s professional and networking events
  • Eligible to vote in Society decisions such as electing trustees or changing the constitution
  • Eligible to stand for election as a trustee
  • Eligible to be volunteer or be nominated for working groups or committees that the trustees may establish

RSE Slack

:megaphone:  :megaphone: More Slack channels – There are lots of slack channels in the RSE space that you can join so feel free to explore by clicking on the +  on the left hand side, next to ‘Channels’ and then ‘Browse Channels’. The most recently created channels are #covid, #rse_fellowships_2020, #sorse_ask_us_anything, #gaming, #healthcare, #remote-working.

If you joined the slack space recently, you were automatically added to these channels:- #general#random#introductions – where we can all get to know each other more hearing about you and your work,  #jobs – where you can post and see new vacancies and #events– to read and post about any relevant interesting events.  From today, we will also automatically add new joiners to the #training channel.  If you’ve been here a while you might not be in those channels so use the + to join them and browse all the other channels available. We’d like to encourage everyone to introduce themselves in the #introductions channel…Connect to the RSE Community by joining the RSE Slack https://society-rse.org/about/contact/

Survey of RSE response to COVID-19

UKRI and the Society are trying to document the work currently underway by RSEs in response to COVID-19. The collated data will be displayed on a UKRI hosted website and on the Society website, and will help to coordinate the response and increase collaboration. This short form will help us get a picture of the work currently underway. It should take less than 10 minutes to complete. Where possible, we ask for this form to be filled out once per RSE group to give an overview of the group’s activities on this topic and if you are an RSE located outside of a group please do complete the form listing each COVID-19 related project you’re involved in.

RSE Group Leaders Meetings – going online

A successful group leaders meeting took place on the 19th June online. The presentations were recorded and will be made available soon. If you’d like to host/chair the next meeting, possibly in September, get in touch with Claire. 

The Society supports meetings for RSE Leaders, which were originally in person twice a year. Now that we are all online, we are trialling a move to every three months. Both the private slack channel and the meetings are for leaders to share and discuss best practice confidentially.  No matter how small or large the group, the challenges are usually quite similar so this leaders network discusses on slack and meets in person (now online) the solutions that work, present interesting projects, share best practice etc. The meetings are informal with no note taking and all conversations are strictly confidential.  If you’d like to join the leaders slack channel and/or attend the next meeting, please get in touch with Claire Wyatt. There is also have a mailing list but this is mostly used to fix the meetings. Discussions are held on slack so as not to clutter inboxes.

 

Announcements

Research Software Engineers in HPC

US RSE group are excited to announce the Research Software Engineers in HPC Workshop (RSE-HPC-2020) to be held at SC20 this fall, now occurring as a fully online event! This will be a half-day workshop, date to be announced. The workshop will bring together RSEs and allies involved in HPC, from all over the world, to grow the RSE community by establishing and strengthening professional networks of current RSEs and RSE leaders. We’ll discuss the current activities and plans of national RSE organizations, discuss the needs of RSEs and RSE groups, and write a report on ways RSE organizations can help address these.

We’ve issued a call for position papers and discussion topic proposals on issues of interest to RSEs. The deadline for submissions is Friday, August 14, 2020. Some submitters will be invited to present their papers at the workshop as lightning talks or to participate as panelists where appropriate.  For more details see the workshop website.

EPSRC RSE Fellowships 2020 & Webinar

The EPSRC has announced a new call for the third cohort of RSE Fellows with a closing date for outlines on the 18th August. Given the very strong interest in previous calls, the community ran a webinar on the 7th July. The webinar included representatives from EPSRC, the Society of Research Software Engineering as well as current RSE Fellows and you can catch up with the webinar here.

SORSE (pronounced ‘source’)

Missing those RSE Conferences this year:question::tada: An international committee has launched SORSE (a Series of Online Research Software Events) today. Our international answer to the COVID-19-induced cancellation of many national RSE conferences. Get involved in this new initiative created by a truly international committee!

To keep us all connected, collaborating and learning until the 2021 RSE Conferences, a wonderful group of volunteers has created this new series that aims to deliver a weekly event — a talk, workshop, panel, poster session, software demo, etc — from the community. This is an open call to all RSEs and anyone involved with research software, worldwide, to submit an abstract.   The call will be open continuously for six months with rolling deadlines (next deadline is the last day of August). Apply at any time and you’ll be included in the next review.

  • Have an idea and want to collaborate on it? – Go to the Topic Bazaar – The topic bazaar is a place to encourage and create collaborations that can then be presented in a variety of formats within the series.
  • Want to have a say on the conference content? Go to the Wishlist and tell us what events and guest speakers you’d like to see. 

More info and follow us on twitter.

2nd International Leaders meeting

Inviting people with a vision to start, establish, consolidate, or advance a Research Software Engineering community in their own national, regional or domain-specific ecosystem to apply for participation!

Quick facts:

  • Who: ~40 RSE established / aspiring activists and influencers from the international Research Software Engineering community
  • What: 3 half days of networking, knowledge exchange & hands-on collaboration towards (1) establishing research software as a first-class-citizen in research, (2) the creation of academic careers for Research Software Engineers on an international level
  • When: 15-16 + 30 September 2020
  • Where: Online
  • Details: https://researchsoftware.org/2020-workshop.html
  • Deadline for applications: 31 July 2020

Nordic RSE Conference

..is now open for proposals and will close on the September 15th. Currently, the conference is scheduled for the 1st and 2nd of December in Stockholm but they are monitoring the situation carefully and will make a decision nearer the time. Registration is due to open in September.

The Research Software Encyclopedia

A community driven, open source strategy to derive context-specific definitions of research software. Read the Introduction to the Encyclopedia and read this small tutorial on how you can use the encyclopedia for your research software and get involved. This is a project in progress, you are welcome to contribute on any front, and there will be more to come in the future!

RDA Recommendations and Guidelines on Data Sharing for COVID-19

(this includes recommendations on research software)

In late March, RDA received a direct request from one of its funders, the European Commission, to create global guidelines and recommendations for data sharing under COVID-19 circumstances. Over 600 data professionals and domain experts signed up and began work in early April 2020.

They have produced a rich set of detailed guidelines to help researchers and data stewards follow best practices to maximise the efficiency of their work, and to act as a blueprint for future emergencies; coupled with recommendations to help policymakers and funders to maximise timely, quality data sharing and appropriate responses in such health emergencies.

On 30 June 2020, RDA published the final version of the RDA COVID-19 Recommendations and Guidelines on data sharing covering four research areas — clinical data, omics practices, epidemiology and social sciences — complimented by overarching areas focusing on legal and ethical considerations, research software, community participation and indigenous data. More information and the final report.

CZI EOSS Call 3 is open for applications – until August 4th

The Chan Zuckerberg Initiative invites applications in support of open source software projects that are essential to biomedical research. The goal of the program is to support software maintenance, growth, development, and community engagement for these critical tools.

Survey of academic researchers who use or wish to use technical support from staff data scientists

If you collaborate or consult with data scientists (or wish you could) then please take this short survey from the Academic Data Science Alliance. Responses are welcome from any geographic region. The results may help push for better policies ad more university funding for data science.

 

Events

August

Virtual OpenACC Summit 2020 (free). The annual summit brings together users of the OpenACC programming model with members of the Open ACC organisation.

September

The eLife Innovation Sprint 2020 takes place on 2nd/3rd September in Cambridge, UK. They’ve announced the 15 projects that have been chosen for the sprint. Registration is open until the 7th June.

The annual HPC Autumn Academy

The HPC Autumn Academy, hosted by the Centre for Scientific Computing at the University of Cambridge, will be online this year, from 7th-18th September 2020. Lectures will given on C++, Fortran, Performance Programming, OpenMP, MPI, and various other topics suitable for Master’s/Ph.D. students, early-career researchers, and early-career industrial software developers who need High-Performance Computing skills as part of their course or work. Full details here.

New Zealand Research Software Engineering Conference 2020

This year, from 9-11 September, we invite you to join us for an interactive and impactful virtual programme that shares the tools, approaches, challenges, and opportunities related to writing code and developing applications that enable research.

NeSI’s NZ RSE conference is one of the few events where scientific programmers, software engineers, developers, IT managers, coding enthusiasts, and big data analysts from Crown Research Institutes, universities, and other public sector organisations can discuss how they’re supporting research ecosystems. By moving online, we’re hoping to welcome even more perspectives and contributions from Australasia’s science and research communities.

November

9th Workshop on Python for High-Performance and Scientific Computing – PyHPC 2020: Call for Submissions!

PyHPC 2020 is looking for Paper and Lightning Talk submissions. More information is available at the Call for Submissions link. The workshop will be held in conjunction with SC20: The International Conference for High Performance Computing, Networking, Storage and Analysis.  November 15th 2020 in Atlanta, GA. More info here.

RSE-HPC-2020

We are excited to announce the Research Software Engineers in HPC Workshop (RSE-HPC-2020) to be held at SC20 this fall, now occurring as a fully online event! This will be a half-day workshop on Monday, November 16 (possibly virtual). The workshop will bring together RSEs and allies involved in HPC, from all over the world, to grow the RSE community by establishing and strengthening professional networks of current RSEs and RSE leaders. We’ll discuss the current activities and plans of national RSE organizations, discuss the needs of RSEs and RSE groups, and write a report on ways RSE organizations can help address these.We’ve issued a call for position papers and discussion topic proposals on issues of interest to RSEs. The deadline for submissions is Friday, August 14, 2020. Some submitters will be invited to present their papers at the workshop as lightning talks or to participate as panelists where appropriate.  For more details see the workshop website.

December

Nordic RSE Conference

..is now open for proposals and will close on the September 15th. Currently, the conference is scheduled for the 1st and 2nd of December in Stockholm but they are monitoring the situation carefully and will make a decision nearer the time. Registration is due to open in September.

 

Podcasts

RSE Stories for July

.. are brought to us from the wonderful Vanessa Sochat based in the US and Peter Schmidt based in the UK. This month they feature:

  • Joe Schoonover, CEO of Fluid Numerics – ‘The Research Software Engineer CEO’
  • Stephan Druskat, RSE at Humboldt University, Berlin, German – ‘Language shapes reality’
  • Charles Ferenbaugh, Computational Scientist at Los Alamos National Lab – ‘We’ve been around a while!’
  • Camilla Longden, Research Software Engineer at Microsoft – ‘Augmenting reality for blind people’
  • Carol Willing, Core Developer for CPython, Jupyter Hub and mybinder.org – ‘A Lifelong Learner’

 

Community info

In the absence of a ‘Resources’ page on the society website (we’re developing one!), here is a collection of new and already mentioned useful things.

Report on the Workshop on Sustainable Software Sustainability 2019

This report is based on the discussions and presentations that took place at the Workshop on Sustainable Software Sustainability in April 2019. It captures the state of the art for a range of Software Sustainability themes that were brought up by the organisers and attendees of the workshop.

Ten Online workshops for learning R

Software Sustainability Institute Fellow Dr Andrew Stewart has shared ten online workshops for those interested in learning R in the context of Open and Reproducible Research: ow.ly/IBMI50AMrGN

UK Exascale ExCALIBUR project

This month we heard from Richard Gunn (EPSRC/UKRI) and Jeremy Yates (UCL) introducing the UK Exascale ExCALIBUR project. It’s in the early stages but RSEs are a core part of the programme. Watch the recorded webinar.

The Turing Way

A new format of their book ‘The Turing Way‘ has been released.

Collaborations Workshop 2020 resources now available

Collaborations Workshop 2020 (CW20) took place online from 31 March – 2 April 2020 and the documentation created to facilitate the virtual unconference is now available for reuse

Originally scheduled to take place at Queen’s University Belfast, CW20 was reorganised within three weeks to take place online due to the situation surrounding COVID-19, and was supported by Microsoft, F1000 Research, Figshare, eLife and Overleaf.

The 1st ARCHER2 eCSE call

The 1st ARCHER2 eCSE call (ARCHER2 eCSE01) opened on the 19 May 2020. The deadline for submitting documents for technical evaluations is 16:00 on 16 June 2020, with the final deadline for proposal submission being 16:00 on 7 July 2020.

Through a series of regular calls, Embedded CSE (eCSE) support provides funding to the ARCHER2 user community to develop software in a sustainable manner, to run on the ARCHER2 system. Funding will enable the employment of a Research Software Engineer (RSE) to work specifically on the relevant software to enable new features or improve the performance of the code. More information here.

Research Software Hour

Hosted by members of the Nordic-RSE community, this continues weekly on Twitch. Research Software Hour is an online stream/show about scientific computing and research software. It is designed to provide the skills typically picked up via informal networks: each week, we do some combination of exploring new tools, analyzing and improving someone’s research code, and discussion. Watchers can take part and contribute code to us which we analyze and discuss on stream. We broadcast on Twitch Tuesdays at 20:30 Oslo time / 21:30 Helsinki time. More info here.

Investigating & Archiving the Scholarly Git Experience

An Alfred P. Sloan Foundation funded project that seeks to investigate the scholarly git experience, and inform the way code and annotations on Git hosting platforms can be made stable, permanently citable, and under active preservation following an established and accepted workflow.  Participate in the survey to give them good information about and from the RSE Community!

Hidden REF

Hidden REF is a year-long competition to highlight the research staff that publications overlook. The way in which the (usual) REF exercise is conducted overlooks many of the people who are vital to the success of research. The Hidden REF will celebrate all research outputs and recognise everyone who contributes to their creation. Anyone who works in a UK research institution can submit to the hidden REF. Read more detail here in this Research Professional news article and get involved via their website.

Interested in Becoming a Mentor? Mentors needed for the GPU Hackathon!

Mentors are the lifeblood of the GPU Hackathon program. During each hackathon, participating teams are paired with mentors who have GPU programming expertise and work alongside the mentors to achieve their goals.  Our mentors come from universities, national laboratories, supercomputing centers, and industry partners. The success of these events relies on the expertise of our mentors and their willingness to share this knowledge with the participants. 

As a mentor, you work with a team that intends to use a programming model—OpenACC, CUDA, OpenMP, Kokkos, or another—that you are familiar with. We typically pair two mentors per team so that skill sets and learning styles are balanced. Regardless of your level of expertise, these events are great opportunities to sharpen your skills, learn about the latest technologies, and collaborate with others in your community. Use the application form to get involved.

Lesson on Security and Safe Use of SSH KeysJames Grant (Bath) has been developing a security lesson that can be accessed at the link above. Thanks to Will Furnass, Jack Betteridge, Will Saunders and James Davenport in particular.

Snakemake supports Google Life Sciences APIThe Python workflow manager Snakemake 5.18 is released and now supports the Google Life Sciences API, meaning you can submit your workflows to use Google Cloud resources. This work was funded and supported by Google and conducted by the awesome Vanessa Sochat (@vsoch) from StanfordCompute.

Archer2 Upcoming Training Schedule

Imperial College Newsletter – The Imperial College RSE Team have been producing a newsletter for a while now to their institute community. They include a ‘Research Software of the month’, links to blog posts and dates for your diary.

Open Access to ACM Digital Library During Coronavirus PandemicFor the next three months, there will be no fees assessed for accessing or downloading work published by ACM.

Free Springer books – the book publisher has just released over 400 book titles that can be downloaded for free. There are many titles on programming, computer science for example ‘Advanced Guide to Python 3 Programming’, ‘Probability and Statistics for Computer Science’, ‘Java in two semesters’.

MaDiH: Research Software Engineering Training’– this was a training course on Research Software Engineering in Digital Humanities modelled on King’s Digital Lab approach.

Efficient R Programming: A book Exciting news for anyone looking to speed up their data analysis code.

An ultimate list of useful git commands.

 

Papers – Quick links

Blog Posts

 

RSE Worldwide

The RSE campaign is growing around the worldwide and new groups are being created all the time. In this section, we introduce these groups and raise awareness of their success. The Society supports new groups and collaborates with representatives from these groups on various initiatives (papers, international workshops). (In alphabetial order).

AU/NZ RSE Group

Back in October 2019, the AU/NZ RSE Group held their first mini-conference for Australasia in Brisbane. Read about that here.

Belgium Research Software Engineers Community

It’s great news to see that another RSE chapter has formed! Check out their new website (link above) and they are planning their first conference in December 2020.

CANARIE

CANARIE have launched a call to fund software development teams at Canadian Higher-education Institutions to directly support researchers. Following the success of a pilot and similar efforts deployed in European countries, CANARIE’s Local Research Software Support call will fund teams of three dedicated, full-time research software developers at a target of six participating institutions. Further info here.

de RSE

As mentioned above, due to the current SARS-CoV-2 virus/COVID-19 pandemic, the deRSE20 organisers have decided to cancel deRSE20 – 2nd International Conference for Research Software Engineers in Germany, planned to take place from 25-27 August in Jena, Germany. “We have made this decision with a heavy heart, but – given the current situation – did not see any other way to eliminate any risks for attendees and organizers.” See the full announcement here.

NL RSE

The Netherlands RSE Group (NL RSE) had their first conference in November 2019. From that conference, here is the presentation ‘Five Recommendations for Fair Software‘ and a recap on the ‘Fair Software‘ Session

The NL-RSE meets on regular basis, every two months on average. Netherlands eScience Center, DTL and SURF frequently organise NL-RSE meetups to encourage collaboration and communication between Research Software Engineers in the Netherlands.

Nordic RSE

The Nordic RSE Group plans to hold their first Nordic-RSE conference in the week December 1-2, 2020.

US RSE

The group recently released their governance document. Also, don’t miss this – the US RSE group have released a summary ‘A year of Progress for US-RSE‘ and it’s a great read! Read about the US RSE group in their newsletter here.

 

Github repo of the month!

Nominate significant code for this feature – either yours or somebody else’s you read and found useful or cool. Send it to Claire Wyatt, RSE Community Manager.

Collect your gold star here if you’ve read all the way to the end!

About the author: cwyatt